Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cd63Tetraspanin. (237 aa)    
Predicted Functional Partners:
tsg101a
Tumor susceptibility 101a.
    
 
 0.992
scarb2b
Uncharacterized protein; Belongs to the CD36 family.
     
 0.949
sdcbp2
Syndecan-binding protein (syntenin) 2.
   
 
 0.927
lamp2
Lysosomal-associated membrane protein 2.
   
 0.924
sdcbp
Syndecan-binding protein (syntenin).
   
 
 0.899
scarb2c
Scavenger receptor class B, member 2c; Belongs to the CD36 family.
     
 0.887
scarb2a
Scavenger receptor class B, member 2a; Belongs to the CD36 family.
     
 0.887
cd9a
Tetraspanin.
  
 
0.882
lamp1b
Lysosomal-associated membrane protein 1b.
   
 
 0.858
cd9b
Tetraspanin.
  
 
0.855
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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