STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rhoqRas homolog gene family, member Q. (205 aa)    
Predicted Functional Partners:
trip10a
Cdc42-interacting protein 4 homolog; Required to coordinate membrane tubulation with reorganization of the actin cytoskeleton during endocytosis. Belongs to the FNBP1 family.
    
 0.979
exoc7
Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.
    
 0.968
crkl
V-crk sarcoma virus CT10 oncogene homolog (Avian)-like.
   
 
 0.955
crk
V-crk sarcoma virus CT10 oncogene homolog (Avian).
   
 
 0.955
rapgef1b
Rap guanine nucleotide exchange factor (GEF) 1b.
    
 0.872
rapgef1a
Rap guanine nucleotide exchange factor (GEF) 1a.
    
 0.872
prex1
Phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1.
    
 0.840
arhgef9a
Cdc42 guanine nucleotide exchange factor (GEF) 9a.
    
 0.840
gopc
Golgi-associated PDZ and coiled-coil motif-containing.
    
 0.769
pak2a
Non-specific serine/threonine protein kinase.
    
 0.760
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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