Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
F1QZM3_DANRESi:ch211-194p6.10. (322 aa)    
Predicted Functional Partners:
jac4
Jacalin 4.
      
 0.719
LOC564481
Hypothetical protein LOC564481.
      
 0.719
ENSDARP00000142590
Si:dkeyp-32g11.8.
      
 0.719
LOC564660
Hypothetical protein LOC564660.
      
 0.719
jac2
Jacalin 2.
      
 0.600
jac3
Jacalin 3.
      
 0.600
cd302
CD302 molecule.
      
 0.596
F1Q4X3_DANRE
Si:dkey-222n6.2; Belongs to the intermediate filament family.
      
 0.595
zgc:165518
Zgc:165518.
      
 0.594
c3a.5
Complement component c3a, duplicate 5.
      
 0.572
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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