Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
susd4Sushi domain-containing protein 4. (484 aa)    
Predicted Functional Partners:
znf407
Zinc finger protein 407.
      
 0.668
F1RD45_DANRE
Si:dkey-163f12.6.
      
 0.649
pcyox1l
Prenylcysteine oxidase 1-like.
      
 0.594
mgat4c
Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C.
      
 0.501
BEND4
BEN domain containing 4.
      
 0.489
bcas3
BCAS3 microtubule-associated cell migration factor.
      
 0.484
slc25a48
Solute carrier family 25 member 48.
      
 0.478
slc29a4
Equilibrative nucleoside transporter 4; Functions as a polyspecific organic cation transporter, efficiently transporting many organic cations such as monoamine neurotransmitters 1-methyl-4-phenylpyridinium and biogenic amines including serotonin, dopamine, norepinephrine and epinephrine. May play a role in regulating central nervous system homeostasis of monoamine neurotransmitters. May be involved in luminal transport of organic cations in the kidney and seems to use luminal proton gradient to drive organic cation reabsorption. Does not seem to transport nucleoside and nucleoside anal [...]
      
 0.463
SLC29A4
Si:ch211-160d14.6.
      
 0.463
sestd1
SEC14 domain and spectrin repeat-containing protein 1; May act as the primary docking protein directing membrane turnover and assembly of the transient receptor potential channels trpc4 and trpc5. Binds phospholipids (By similarity); Belongs to the SOLO family.
      
 0.444
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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