Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vamp8Vesicle-associated membrane protein 8 (Endobrevin). (124 aa)    
Predicted Functional Partners:
stx17
Syntaxin 17.
    
 0.999
snap29
Synaptosome-associated protein 29.
   
 0.999
stx8
Stx8 protein.
    
 0.999
stx18
Syntaxin-18; Syntaxin that may be involved in targeting and fusion of Golgi-derived retrograde transport vesicles with the ER. Belongs to the syntaxin family.
    
 0.998
vti1b
Vesicle transport through interaction with t-SNAREs homolog 1B (Yeast).
   
 0.996
snap23.1
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
    
 0.995
ENSDARP00000142540
Si:ch73-234b20.5.
  
  
0.995
sybl1
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
    
0.993
stx7l
Syntaxin 7-like; Belongs to the syntaxin family.
    
 0.992
gosr1
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
    
 0.991
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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