STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col21a1Collagen, type XXI, alpha 1. (717 aa)    
Predicted Functional Partners:
EPB41L2
Si:ch73-18b11.1.
      
 0.717
itgb1bp1
Integrin beta-1-binding protein 1.
      
 0.645
zbtb24
Zinc finger and BTB domain-containing protein 24; May be involved in BMP2-induced transcription. Belongs to the krueppel C2H2-type zinc-finger protein family.
    
 
 0.631
col8a2
Collagen, type VIII, alpha 2.
 
  
0.597
LOC108181664
Hyaluronidase.
    
 
 0.596
col8a1b
Collagen, type VIII, alpha 1b.
  
  
0.593
b4galt5
Beta-1,4-galactosyltransferase 5; Catalyzes the synthesis of lactosylceramide (LacCer) via the transfer of galactose from UDP-galactose to glucosylceramide (GlcCer) (By similarity). Required for proper patterning of the dorsoventral axis during embryogenesis through the regulation of BMP signaling. Plays a role in proteoglycan glycosylation that is required for BMP-dependent specification of the dorsoventral axis ; Belongs to the glycosyltransferase 7 family.
      
 0.581
akap7
A kinase (PRKA) anchor protein 7.
      
 0.580
itgbl1
Integrin, beta-like 1.
    
 
 0.563
col9a2
Procollagen, type IX, alpha 2.
  
  
0.558
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.