STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F1QKV1_DANRESi:rp71-1g18.13. (669 aa)    
Predicted Functional Partners:
fancm
FA complementation group M.
    
 
 0.731
ENSDARP00000153311
Helicase ATP-binding domain-containing protein.
    
 
 0.731
fam20cb
FAM20C golgi-associated secretory pathway kinase b.
    
  0.511
masp2
Mannan-binding lectin serine peptidase 2; Belongs to the peptidase S1 family.
    
  0.502
hbba2
Hemoglobin, beta adult 2; Belongs to the globin family.
    
  0.501
hbbe2
Hemoglobin beta embryonic-2; Belongs to the globin family.
    
  0.501
hbaa2
Hemoglobin, alpha adult 2; Belongs to the globin family.
    
  0.501
hbba1
Hemoglobin subunit beta-1; Involved in oxygen transport from gills to the various peripheral tissues; Belongs to the globin family.
    
  0.501
hbae1.2
Hemoglobin, alpha embryonic 1.1; Belongs to the globin family.
    
  0.501
hbbe1.3
Novel protein similar to zebrafish embryonic 1 beta-globin (BE1); Belongs to the globin family.
    
  0.501
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.