STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znhit3Zinc finger, HIT-type-containing 3. (151 aa)    
Predicted Functional Partners:
nufip1
Nuclear FMR1-interacting protein 1.
   
 
 0.929
mrm1
Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae).
      
 0.874
tada2a
Transcriptional adapter.
   
 
 0.857
znhit6
Zinc finger HIT-type-containing 6.
    
 0.853
ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
   
  
 0.812
pigw
Phosphatidylinositol-glycan biosynthesis class W protein; Probable acetyltransferase, which acetylates the inositol ring of phosphatidylinositol during biosynthesis of GPI-anchor.
      
 0.775
synrg
Synergin, gamma.
      
 0.753
tbcd
Tubulin folding cofactor D.
      
 0.744
myo19
Myosin XIX; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
      
 0.739
ggnbp2
Gametogenetin-binding protein 2.
      
 0.720
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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