Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
znhit3Zinc finger, HIT-type-containing 3. (151 aa)    
Predicted Functional Partners:
znhit6
Zinc finger HIT-type-containing 6.
    
 
 0.956
nufip1
Nuclear FMR1-interacting protein 1.
   
 
 0.879
mrm1
Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae).
      
 0.844
pigw
Phosphatidylinositol-glycan biosynthesis class W protein; Probable acetyltransferase, which acetylates the inositol ring of phosphatidylinositol during biosynthesis of GPI-anchor.
      
 0.824
X1WCS6_DANRE
Si:zfos-375h5.1.
      
 0.800
nop58
NOP58 ribonucleoprotein homolog (yeast).
    
 
 0.796
ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
   
  
 0.788
ggnbp2
Gametogenetin-binding protein 2.
      
 0.787
rpap3
RNA polymerase II-associated protein 3.
      
 0.785
tada2a
Transcriptional adapter.
      
 0.783
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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