Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rs1aRetinoschisis (X-linked, juvenile) 1. (230 aa)    
Predicted Functional Partners:
crygm2c
Crystallin, gamma M2c; Belongs to the beta/gamma-crystallin family.
      
 0.754
zcchc2
Zinc finger, CCHC domain-containing 2.
      
 0.738
cabp5b
Calcium-binding protein 5b.
   
 0.681
cabp5a
Calcium-binding protein 5a.
    
 0.619
pgp
Phosphoglycolate phosphatase; Belongs to the HAD-like hydrolase superfamily.
      
 0.595
crx
Cone-rod homeobox.
   
  
 0.588
mak
Male germ cell-associated kinase.
   
  
 0.577
clk4b
CDC-like kinase 4b; Belongs to the protein kinase superfamily.
      
 0.573
faub
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.569
faua
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.569
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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