STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rs1aRetinoschisis (X-linked, juvenile) 1. (230 aa)    
Predicted Functional Partners:
faub
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.742
crygm2c
Crystallin, gamma M2c; Belongs to the beta/gamma-crystallin family.
   
  
 0.742
zcchc2
Zinc finger, CCHC domain-containing 2.
      
 0.742
faua
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.742
srpk1a
SRSF protein kinase 1a.
    
 
 0.670
mak
Male germ cell-associated kinase.
   
  
 0.566
crx
Cone-rod homeobox.
   
  
 0.549
rps14
Ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
   
 
 0.544
samd11
Sterile alpha motif domain-containing 11.
      
 0.541
clk4b
CDC-like kinase 4b; Belongs to the protein kinase superfamily.
      
 0.540
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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