STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trim63aTripartite motif-containing 63a. (345 aa)    
Predicted Functional Partners:
fbxo32
F-box protein 32.
   
  
 0.936
fbxo30a
F-box protein 30a.
   
  
 0.750
capn3a
Calpain 3a, (p94); Belongs to the peptidase C2 family.
    
 
 0.694
fbxo25
F-box only protein 25.
      
 0.669
MANEAL
Glycoprotein endo-alpha-1,2-mannosidase-like protein.
      
 0.650
neb
Nebulin.
   
 
 0.628
nrap
Nebulin-related-anchoring protein.
   
 
 0.603
myog
Myogenin.
   
  
 0.592
capn1a
Calpain 1, (mu/I) large subunit a; Belongs to the peptidase C2 family.
    
 
 0.565
zgc:55262
Zgc:55262; Belongs to the peptidase C2 family.
    
 
 0.565
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.