rbm28 protein (Danio rerio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rbm28

RNA-binding motif protein 28. (856 aa)

Predicted Functional Partners:

nifk

0.995

ddx27

0.993

noc2l

0.992

ebna1bp2

0.991

gtpbp4

0.990

rpf2

0.990

ddx24

0.990

rbm34

0.990

pes

0.988

nip7

0.988

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ddx24	ddx27	ENSDARP00000130877	ENSDARP00000105288	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.	0.975
ddx24	ebna1bp2	ENSDARP00000130877	ENSDARP00000151663	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	EBNA1-binding protein 2.	0.974
ddx24	gtpbp4	ENSDARP00000130877	ENSDARP00000002061	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.953
ddx24	nifk	ENSDARP00000130877	ENSDARP00000059548	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	MKI67 FHA domain-interacting nucleolar phosphoprotein; Plays an essential role in early embryonic development.	0.981
ddx24	nip7	ENSDARP00000130877	ENSDARP00000076524	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly.	0.807
ddx24	noc2l	ENSDARP00000130877	ENSDARP00000086095	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	NOC2-like nucleolar-associated transcriptional repressor.	0.980
ddx24	pes	ENSDARP00000130877	ENSDARP00000026992	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	Pescadillo; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.978
ddx24	rbm28	ENSDARP00000130877	ENSDARP00000034794	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	RNA-binding motif protein 28.	0.990
ddx24	rbm34	ENSDARP00000130877	ENSDARP00000136398	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	RNA-binding motif protein 34.	0.981
ddx24	rpf2	ENSDARP00000130877	ENSDARP00000064541	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	Ribosome production factor 2 homolog.	0.962
ddx27	ddx24	ENSDARP00000105288	ENSDARP00000130877	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box helicase 24.	0.975
ddx27	ebna1bp2	ENSDARP00000105288	ENSDARP00000151663	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.	EBNA1-binding protein 2.	0.951
ddx27	gtpbp4	ENSDARP00000105288	ENSDARP00000002061	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.975
ddx27	nifk	ENSDARP00000105288	ENSDARP00000059548	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.	MKI67 FHA domain-interacting nucleolar phosphoprotein; Plays an essential role in early embryonic development.	0.990
ddx27	nip7	ENSDARP00000105288	ENSDARP00000076524	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly.	0.702
ddx27	noc2l	ENSDARP00000105288	ENSDARP00000086095	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.	NOC2-like nucleolar-associated transcriptional repressor.	0.993
ddx27	pes	ENSDARP00000105288	ENSDARP00000026992	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.	Pescadillo; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.995
ddx27	rbm28	ENSDARP00000105288	ENSDARP00000034794	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.	RNA-binding motif protein 28.	0.993
ddx27	rbm34	ENSDARP00000105288	ENSDARP00000136398	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.	RNA-binding motif protein 34.	0.990
ddx27	rpf2	ENSDARP00000105288	ENSDARP00000064541	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.	Ribosome production factor 2 homolog.	0.989

page 1 of 6

Server load: low (12%) [HD]

Permalink

Network

Co-occurrence

Experiments

Co-expression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About