Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ufd1lUbiquitin recognition factor in ER-associated degradation 1. (308 aa)    
Predicted Functional Partners:
nploc4
Nuclear protein localization 4 homolog (S. cerevisiae).
   
 0.999
ubxn7
UBX domain protein 7.
   
 0.997
vcp
Transitional endoplasmic reticulum ATPase; Necessary for the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis. Involved in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). The transfer of membranes from the endoplasmic reticulum to the Golgi apparatus occurs via 50-70 nm transition vesicles which derive from part-rough, part-smooth transitional elements of the endoplasmic reticulum (tER). Vesicle budding from the tER is an ATP-dependent process. Also involved in DNA damage response: recruited to double-strand [...]
   
 0.996
zgc:136908
Zgc:136908; Belongs to the AAA ATPase family.
   
 0.995
faf1
Fas (TNFRSF6)-associated factor 1.
   
 
 0.991
faap100
Si:dkey-57h18.1.
   
 0.989
faf2
Fas-associated factor family member 2.
    
 
 0.987
nsfl1c
NSFL1 (p97) cofactor (p47).
   
 
 0.987
vcpip1
Valosin-containing protein (p97)/p47 complex-interacting protein 1.
    
 
 0.982
spata5l1
Spermatogenesis-associated 5-like 1.
   
 0.982
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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