Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cbln13Cerebellin 13. (212 aa)    
Predicted Functional Partners:
ms4a17a.4
Membrane-spanning 4-domains, subfamily A, member 17A.4.
      
 0.881
f7i
Coagulation factor VIIi.
   
 0.809
slc25a38a
Mitochondrial glycine transporter A; Mitochondrial glycine transporter that imports glycine into the mitochondrial matrix. Plays an important role in providing glycine for the first enzymatic step in heme biosynthesis, the condensation of glycine with succinyl-CoA to produce 5-aminolevulinate (ALA) in the mitochondrial matrix. Required during erythropoiesis. Belongs to the mitochondrial carrier (TC 2.A.29) family. SLC25A38 subfamily.
      
 0.775
scpp8
Secretory calcium-binding phosphoprotein 8.
      
 0.739
slc16a9a
Solute carrier family 16 member 9a.
      
 0.719
il4r.2
Interleukin 4 receptor, tandem duplicate 1.
    
 0.677
ompa
Olfactory marker protein a.
      
 0.662
esm1
Endothelial cell-specific molecule 1.
     
 0.486
il4r.1
Interleukin 4 receptor, tandem duplicate 1.
    
 0.476
lepb
Leptin b.
      
 0.446
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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