STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glcci1aGlucocorticoid-induced 1a. (531 aa)    
Predicted Functional Partners:
krcp
Kelch repeat-containing protein.
      
 0.724
FAM53C
LOC100002393 protein.
   
  
 0.711
calhm5.1
Calcium homeostasis modulator protein 5; Pore-forming subunit of a voltage-gated ion channel. Belongs to the CALHM family.
   
  
 0.646
rnf169
E3 ubiquitin-protein ligase RNF169; Probable E3 ubiquitin-protein ligase that acts as a negative regulator of double-strand breaks (DSBs) repair following DNA damage.
   
  
 0.603
tspan31
Tetraspanin-31.
      
 0.582
rarres3
Retinoic acid receptor responder 3.
      
 0.582
p4htm
Prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum).
      
 0.568
dcaf7
Ddb1 and cul4-associated factor 7.
    
 
 0.555
pamr1
Peptidase domain-containing-associated with muscle regeneration 1; Belongs to the peptidase S1 family.
      
 0.555
ggt5a
Gamma-glutamyltransferase 5a.
      
 0.553
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.