STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sulf2bExtracellular sulfatase. (885 aa)    
Predicted Functional Partners:
lrrc4bb
Leucine-rich repeat-containing 4Bb.
    
 
 0.669
tmed7
Transmembrane p24-trafficking protein 7.
      
 0.669
wu:fb59d01
Wu:fb59d01.
      
 0.666
or129-1
Odorant receptor, family H, subfamily 129, member 1.
      
 0.663
naa25
N(alpha)-acetyltransferase 25, NatB auxiliary subunit.
      
 0.662
wu:fc11c11
PiggyBac transposable element-derived 4.
   
 
 0.656
SUSD2
Sushi domain containing 2.
   
  
 0.648
rbm4.3
RNA-binding motif protein 4.3.
      
 0.645
ier5l
Immediate early response gene 5-like protein; Belongs to the IER family.
   
  
 0.634
hmgb3a
High mobility group box 3a.
   
  
 0.585
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.