STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
itgb1b.2Integrin beta; Belongs to the integrin beta chain family. (613 aa)    
Predicted Functional Partners:
itga5
Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.
   
 0.980
ptk2ab
Protein tyrosine kinase 2ab; Belongs to the protein kinase superfamily. Tyr protein kinase family.
   
 0.979
tln1
Talin 1.
   
 0.978
itga6b
Integrin, alpha 6b; Belongs to the integrin alpha chain family.
   
 0.972
itga6l
Integrin, alpha 6,-like; Belongs to the integrin alpha chain family.
   
 0.972
itga6a
Integrin, alpha 6a; Belongs to the integrin alpha chain family.
   
 0.969
tln2a
Talin 2a.
   
 0.964
tln2b
Talin 2b.
   
 0.964
vtna
Vitronectin a.
   
 0.963
vtnb
Vitronectin b.
   
 0.960
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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