Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
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[Homology]
Score
cryzl1Crystallin, zeta (Quinone reductase)-like 1. (345 aa)    
Predicted Functional Partners:
xylb
Xylulokinase homolog (H. influenzae).
  
 
 0.939
C25H12orf4
Zgc:154077.
   
   0.932
gatd1
Glutamine amidotransferase-like class 1 domain-containing protein 1.
   
   0.888
cryl1
Crystallin, lambda 1.
  
 
 0.838
crym
Crystallin, mu.
   
  
 0.816
ppp1r21
Protein phosphatase 1 regulatory subunit 21; Putative regulator of protein phosphatase 1 (PP1) activity. May play a role in the endosomal sorting process or in endosome maturation pathway.
    
   0.787
urb1
URB1 ribosome biogenesis homolog.
      
 0.749
wdr19
WD repeat domain 19.
      
 0.709
pgk1
Phosphoglycerate kinase.
   
  
 0.707
mrpl1
Mitochondrial ribosomal protein L1.
      
 0.696
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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