STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wu:fj42b12Si:ch211-200p22.4. (316 aa)    
Predicted Functional Partners:
LOC103910581
Huntingtin-interacting protein 1-related a.
    
 
 0.831
hip1rb
Huntingtin-interacting protein 1-related b.
    
 
 0.831
gak
Cyclin G-associated kinase.
   
 
 0.768
aak1b
AP2-associated kinase 1b.
    
 
 0.693
vamp3
Vesicle-associated membrane protein 3 (Cellubrevin).
   
 
 0.673
cltcl1
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
   
 
 0.638
vamp8
Vesicle-associated membrane protein 8 (Endobrevin).
    
 
 0.633
ldlrap1b
Low density lipoprotein receptor adaptor protein 1b.
      
 0.625
epn2
Epsin 2.
   
 
 0.573
vamp2
Vesicle-associated membrane protein 2.
    
 
 0.569
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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