Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
lrit2Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2. (561 aa)    
Predicted Functional Partners:
ccdc126
Coiled-coil domain-containing 126.
      
 0.972
ankrd33aa
Ankyrin repeat domain 33Aa.
    
 0.968
wdr17
WD repeat domain 17.
      
 0.961
ankrd33ab
Ankyrin repeat domain 33Ab.
    
 0.960
serpine3
Probable serpin E3; Probable serine protease inhibitor; Belongs to the serpin family.
      
 0.871
MGARP
Si:ch211-235e9.8.
      
 0.800
kcnj14
Potassium inwardly rectifying channel subfamily J member 14.
      
 0.800
lrit1a
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.
  
0.773
grifin
Grifin; Binds lactose.
      
 0.734
X1WGA7_DANRE
Si:ch211-266k8.6.
      
 0.719
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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