STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrit2Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2. (561 aa)    
Predicted Functional Partners:
ankrd33aa
Ankyrin repeat domain 33Aa.
   
 
 0.992
wdr17
WD repeat domain 17.
      
 0.991
ankrd33ab
Ankyrin repeat domain 33Ab.
   
 
 0.984
ccdc126
Coiled-coil domain-containing 126.
      
 0.957
MGARP
Si:ch211-235e9.8.
      
 0.860
kcnj14
Potassium inwardly rectifying channel subfamily J member 14.
      
 0.860
grifin
Grifin; Binds lactose.
      
 0.838
lrit1a
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.
  
 
0.806
lrit1b
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.
  
  
0.720
ddx28
DEAD (Asp-Glu-Ala-Asp) box polypeptide 28.
    
 
 0.588
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.