Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pgbd5PiggyBac transposable element-derived 5. (518 aa)    
Predicted Functional Partners:
setmar
SET domain and mariner transposase fusion protein.
    
 
 0.857
harbi1
Putative nuclease HARBI1; Transposase-derived protein that may have nuclease activity (Potential). Does not have transposase activity (By similarity).
      
 0.794
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
   0.734
zgc:113436
Zgc:113436.
   
 
 0.723
paxx
PAXX non-homologous end joining factor.
      
 0.720
naif1
Nuclear apoptosis-inducing factor 1.
   
  
 0.718
tmem145
Transmembrane protein 145.
   
  
 0.714
zmym2
Zinc finger, MYM-type 2.
    
 
 0.708
samd11
Sterile alpha motif domain-containing 11.
    
 
 0.706
LOC110437757
Si:ch211-255f4.7.
    
 
 0.676
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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