STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zmp:0000001073Si:cabz01090165.1. (639 aa)    
Predicted Functional Partners:
gria1a
Glutamate receptor, ionotropic, AMPA 1a.
   
  0.574
gria4a
Glutamate receptor, ionotropic, AMPA 4a.
   
  0.574
gria3a
Glutamate receptor, ionotropic, AMPA 3a.
   
  0.574
gria3b
Glutamate receptor, ionotropic, AMPA 3b.
   
  0.574
dlg4
Disks large homolog 4; Plays a role in synapse assembly and function. Plays a role in synaptic plasticity.
   
 0.562
dlg3
Discs, large homolog 3 (Drosophila); Belongs to the MAGUK family.
   
 0.562
dlg1l
Discs large homolog 1-like protein; May play a role in synapse assembly and function.
   
 0.562
grin1a
Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.
   
 0.546
rtn1b
Reticulon.
    
  0.511
rtn1a
Reticulon.
    
  0.511
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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