STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
grin1bGlutamate receptor, ionotropic, N-methyl D-aspartate 1b. (937 aa)    
Predicted Functional Partners:
grin2ab
Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b.
   
0.921
grin2da
Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, a.
   
0.867
grin2aa
Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.
   
0.862
grin2ca
Glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca.
   
0.858
grin2bb
Glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b.
   
0.852
GRIN2B
Glutamate ionotropic receptor NMDA type subunit 2B.
   
0.828
gria3a
Glutamate receptor, ionotropic, AMPA 3a.
   
0.824
LOC100149482
Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, b; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
   
0.816
grin2cb
Uncharacterized protein.
   
0.816
grin3a
Glutamate receptor, ionotropic, N-methyl-D-aspartate 3A.
   
 
0.808
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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