Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
smndc1Survival of motor neuron-related-splicing factor 30; Necessary for spliceosome assembly; Belongs to the SMN family. (237 aa)    
Predicted Functional Partners:
sf3a2
Splicing factor 3a, subunit 2.
   
 0.985
prpf3
PRP3 pre-mRNA-processing factor 3 homolog (yeast).
    
 
 0.964
sf3b1
Splicing factor 3b, subunit 1.
   
 0.950
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.950
sf3b2
Splicing factor 3b, subunit 2.
   
 0.935
phf5a
PHD finger protein 5A.
   
 0.926
u2surp
U2 snRNP-associated SURP domain-containing.
    
 0.918
sf3a3
Splicing factor 3a, subunit 3.
   
 0.917
prpf6
PRP6 pre-mRNA-processing factor 6 homolog (S. cerevisiae).
    
 
 0.916
puf60a
Poly-U-binding-splicing factor a.
   
 0.905
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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