STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smndc1Survival of motor neuron-related-splicing factor 30; Necessary for spliceosome assembly; Belongs to the SMN family. (237 aa)    
Predicted Functional Partners:
prpf6
PRP6 pre-mRNA-processing factor 6 homolog (S. cerevisiae).
   
 
 0.962
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
     
 0.951
phf5a
PHD finger protein 5A.
     
 0.890
ddx46
Probable ATP-dependent RNA helicase DDX46; Plays an essential role in splicing, either prior to, or during A complex formation; Belongs to the DEAD box helicase family. DDX46/PRP5 subfamily.
   
 
 0.878
snrpb2
Small nuclear ribonucleoprotein polypeptide B2.
   
 0.849
rbm17
RNA-binding motif protein 17.
   
 
 0.838
puf60a
Poly-U-binding-splicing factor a.
   
 0.832
u2surp
U2 snRNP-associated SURP domain-containing.
    
  0.825
dhx15
DEAH (Asp-Glu-Ala-His) box helicase 15.
   
 
  0.811
cherp
Calcium homeostasis endoplasmic reticulum protein.
   
 
  0.806
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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