STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lhfpl3LHFPL tetraspan subfamily member 3 protein. (216 aa)    
Predicted Functional Partners:
celf4
CUGBP Elav-like family member 4; RNA-binding protein that may be implicated in the regulation of pre-mRNA alternative splicing; Belongs to the CELF/BRUNOL family.
   
  
 0.751
gphnb
Gephyrin2 isoform.
      
 0.576
gphna
Gephyrin a.
      
 0.576
pcdh15a
Protocadherin-related 15a.
   
 
 0.566
cdhr5b
Cadherin-related family member 5b.
   
 
 0.563
pcdh15b
Protocadherin-related 15b.
   
 
 0.563
lmx1bb
LIM homeobox transcription factor 1, beta 1.
      
 0.452
btbd9
BTB (POZ) domain-containing 9.
      
 0.439
farp2
FERM, RhoGEF and pleckstrin domain protein 2.
      
 0.410
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.