STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
negr1Neuronal growth regulator 1. (346 aa)    
Predicted Functional Partners:
kcnh8
Potassium voltage-gated channel, subfamily H (eag-related), member 8.
      
 0.779
sez6b
Seizure-related 6 homolog b.
   
 
 0.762
gprc5ba
G protein-coupled receptor, class C, group 5, member Ba.
      
 0.752
mettl11b
Alpha N-terminal protein methyltransferase 1B; Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes monomethylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and Pro in the Pro-Pro-Lys motif. May activate NTMT1 by priming its substrates for trimethylation (By similarity).
      
 0.744
selenou1b
Selenoprotein U1b.
      
 0.669
IGLON5
Zgc:110372.
   
 
0.608
tmem18
Transmembrane protein 18.
      
 0.581
ccdc141
Coiled-coil domain-containing 141.
    
 
 0.573
sez6a
Seizure-related 6 homolog a.
   
 
 0.572
zfp64
Zinc finger protein 64 homolog (mouse).
   
  
 0.567
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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