Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
negr1Neuronal growth regulator 1. (346 aa)    
Predicted Functional Partners:
IGLON5
Zgc:110372.
   
 
0.745
sez6b
Seizure-related 6 homolog b.
   
 
 0.735
tmem236
Transmembrane protein 236.
      
 0.720
kcnh8
Potassium voltage-gated channel, subfamily H (eag-related), member 8.
      
 0.705
ksr2
Kinase suppressor of ras 2.
  
 
 0.703
ntm
Neurotrimin.
  
 
0.660
selenou1b
Selenoprotein U1b.
      
 0.660
gprc5ba
G protein-coupled receptor, class C, group 5, member Ba.
      
 0.627
sec16b
SEC16 homolog B, endoplasmic reticulum export factor.
      
 0.595
phf3
PHD finger protein 3.
      
 0.594
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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