STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)    
Predicted Functional Partners:
eftud2
Elongation factor Tu GTP-binding domain-containing 2.
   
 0.999
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
   
 0.999
prpf8
Pre-mRNA-processing factor 8.
   
 0.999
prpf6
PRP6 pre-mRNA-processing factor 6 homolog (S. cerevisiae).
   
 0.999
prpf19
PRP19/PSO4 homolog (S. cerevisiae).
   
 
0.990
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.989
ddx23
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.
   
 0.988
mfap1
Microfibril-associated protein 1.
   
   0.988
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
  
 
 
0.988
bcas2
Pre-mRNA-splicing factor SPF27; Required for pre-mRNA splicing as component of the activated spliceosome. May have a scaffolding role in the spliceosome assembly as it contacts all other components of the core complex.
   
 
 0.985
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.