STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptgr1Prostaglandin reductase 1. (329 aa)    
Predicted Functional Partners:
mmd2a
Monocyte to macrophage differentiation-associated 2a.
   
  
 0.724
rh50
Rh50-like protein; Belongs to the ammonium transporter (TC 2.A.49) family. Rh subfamily.
      
 0.670
aifm4
Apoptosis-inducing factor mitochondria-associated 4.
   
  
 0.653
ublcp1
Ubiquitin-like domain-containing CTD phosphatase 1; Dephosphorylates 26S nuclear proteasomes, thereby decreasing their proteolytic activity. The dephosphorylation may prevent assembly of the core and regulatory particles (CP and RP) into mature 26S proteasome (By similarity).
   
  
 0.626
UBLCP1
Ubiquitin like domain containing CTD phosphatase 1.
      
 0.626
fam136a
Protein FAM136A; Belongs to the FAM136 family.
   
  
 0.624
lta4h
Leukotriene A(4) hydrolase; Belongs to the peptidase M1 family.
   
  
 0.616
st6galnac3
N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7C); Belongs to the glycosyltransferase 29 family.
      
 0.568
MEP1B
Meprin A subunit.
      
 0.567
mep1b
Meprin A subunit.
      
 0.567
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.