STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epb41bErythrocyte membrane protein band 4.1 (Elliptocytosis 1, RH-linked). (1534 aa)    
Predicted Functional Partners:
gypc
Glycophorin C (Gerbich blood group).
   
 
 0.884
slc4a1a
Anion exchange protein.
   
  
 0.823
add3b
Adducin 3 (gamma) b.
      
 0.811
add2
Adducin 2 (beta).
      
 0.797
add1
Adducin 1 (Alpha).
   
  
 0.773
add3a
Adducin 3 (gamma) a.
   
  
 0.765
cntnap1
Contactin-associated protein 1.
    
 
 0.764
acta1b
Actin alpha 1, skeletal muscle b.
   
 
 0.763
sptb
Spectrin beta chain; Belongs to the spectrin family.
   
 
 0.729
xkr7
XK-related protein.
   
  
 0.644
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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