Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sap30bpSAP30-binding protein. (304 aa)    
Predicted Functional Partners:
thoc1
THO complex 1.
   
 
 0.945
puf60b
Poly(U)-binding-splicing factor PUF60-B; DNA- and RNA-binding protein, involved in transcription repression and pre-mRNA splicing.
   
   0.916
puf60a
Poly-U-binding-splicing factor a.
   
   0.891
rbm17
RNA-binding motif protein 17.
   
   0.796
sf3a2
Splicing factor 3a, subunit 2.
   
   0.789
ccnl1a
Novel protein similar to vertebrate cyclin L1 (CCNL1); Belongs to the cyclin family.
    
   0.789
cdk10
Cyclin-dependent kinase 10; Belongs to the protein kinase superfamily.
   
   0.769
cdk11b
Cyclin-dependent kinase 11B.
   
   0.769
otop2
Otopetrin 2.
      
 0.698
rbl1
Retinoblastoma-like 1 (p107).
      
 0.687
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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