Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ccdc80l1Coiled-coil domain-containing 80-like 1. (852 aa)    
Predicted Functional Partners:
col5a2b
Collagen, type V, alpha 2b.
    
 0.812
si:ch73-1a9.3
Si:ch73-1a9.3.
      
 0.740
nexmifb
Neurite extension and migration factor b.
      
 0.719
sema6ba
Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Ba; Belongs to the semaphorin family.
      
 0.719
F1QM60_DANRE
Si:ch211-282j17.8.
      
 0.669
zmp:0000001114
Zmp:0000001114.
      
 0.663
adam23a
ADAM metallopeptidase domain 23a.
      
 0.594
nitr3r.1l
Novel immune-type receptor 3,-related 1-like.
      
 0.589
faub
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.569
faua
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.569
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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