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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tiprlTIP41, TOR-signaling pathway regulator-like (S. cerevisiae). (269 aa)    
Predicted Functional Partners:
tbcelb
Tubulin folding cofactor E-like b.
      
 0.957
ppp6c
Serine/threonine-protein phosphatase.
   
 
 0.795
mhc2dbb
Major histocompatibility complex class II DBB gene.
      
 0.748
nrgna
Neurogranin (protein kinase C substrate, RC3) a.
      
 0.733
zgc:56064
Serine/threonine-protein phosphatase.
   
 
 0.726
igbp1
Immunoglobulin (CD79A)-binding protein 1.
   
 
 0.723
ppp4ca
Serine/threonine-protein phosphatase 4 catalytic subunit A; Protein phosphatase that regulates many processes such as microtubule organization at centrosomes; Belongs to the PPP phosphatase family. PP-4 (PP-X) subfamily.
   
 
 0.721
ppp2ca
Serine/threonine-protein phosphatase.
    
 
 0.710
ppp4cb
Serine/threonine-protein phosphatase 4 catalytic subunit B; Protein phosphatase that regulates many processes such as microtubule organization at centrosomes; Belongs to the PPP phosphatase family. PP-4 (PP-X) subfamily.
    
 
 0.710
ppp2cb
Serine/threonine-protein phosphatase.
   
 
 0.710
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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