STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lynTyrosine-protein kinase. (510 aa)    
Predicted Functional Partners:
fam49ba
Family with sequence similarity 49 member Ba.
      
 0.666
tlr20.3
Toll-like receptor 20, tandem duplicate 3.
    
 
 0.598
tlr20.3-2
Toll-like receptor 20, tandem duplicate 3.
    
 
 0.598
arhgef2
Rho/rac guanine nucleotide exchange factor (GEF) 2.
   
 
 0.585
akirin2
Akirin 2.
    
 
 0.581
clic2
Chloride intracellular channel protein; Belongs to the chloride channel CLIC family.
   
 
 0.574
matk
Tyrosine-protein kinase.
  
 
0.539
csk
Tyrosine-protein kinase.
  
 
0.532
alox5ap
Arachidonate 5-lipoxygenase-activating protein.
   
  
 0.527
rasgrp3
RAS guanyl-releasing protein 3 (calcium and DAG-regulated).
   
 
 0.522
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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