Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
praf2PRA1 family protein. (178 aa)    
Predicted Functional Partners:
arl6ip5b
PRA1 family protein.
   
   0.579
arl6ip5a
PRA1 family protein.
   
   0.579
gabbr1a
Gamma-aminobutyric acid (GABA) B receptor, 1a.
      
 0.503
RAB19
RAB19, member RAS oncogene family.
    
 
 0.497
ENSDARP00000132178
Uncharacterized protein.
    
 
 0.497
bud13
BUD13 homolog.
      
 0.477
wdfy1
WD repeat and FYVE domain-containing 1.
    
 
 0.463
wdfy2
WD repeat and FYVE domain-containing 2.
    
 
 0.463
rabac1
PRA1 family protein.
   
  
 0.435
yif1b
Protein YIF1B.
      
 0.430
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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