Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arl4abADP-ribosylation factor-like 4, like. (201 aa)    
Predicted Functional Partners:
sccpdha.1
Saccharopine dehydrogenase a, tandem duplicate 1.
    
 
 0.737
pkdcca
Protein kinase domain-containing, cytoplasmic a.
    
 0.695
cyth4b
Cytohesin 4b.
    
 0.642
FRMD4A
Si:ch211-220f12.1.
    
 
 0.640
XRCC2
X-ray repair cross complementing 2.
    
 
 0.634
cyth1b
Cytohesin 1b.
    
 0.630
cyth4a
Cytohesin 4a.
    
 0.623
cyth3a
Cytohesin 3a.
    
 0.618
ublcp1
Ubiquitin-like domain-containing CTD phosphatase 1; Dephosphorylates 26S nuclear proteasomes, thereby decreasing their proteolytic activity. The dephosphorylation may prevent assembly of the core and regulatory particles (CP and RP) into mature 26S proteasome (By similarity).
    
 
 0.587
UBLCP1
Ubiquitin like domain containing CTD phosphatase 1.
    
 
 0.587
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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