Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
myh11aMyosin, heavy polypeptide 11, smooth muscle; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1974 aa)    
Predicted Functional Partners:
myl9a
Myosin, light chain 9a, regulatory.
   
 0.987
myl12.2
Myosin, light chain 12, genome duplicate 2.
   
 0.982
myl12.1
Myosin, light chain 12, genome duplicate 1.
   
 0.982
myl6
Myosin, light chain 6, alkali, smooth muscle and non-muscle.
   
 0.976
myl9b
Myosin, light polypeptide 9, regulatory.
   
 0.969
acta2
Actin, alpha 2, smooth muscle, aorta.
   
 0.958
zgc:153867
Zgc:153867.
   
 0.945
myh9a
Myosin, heavy chain 9a, non-muscle; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
  
  
0.944
myl7
Myosin, light polypeptide 7, regulatory.
   
 0.925
myh10
Myosin, heavy chain 10, non-muscle; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
  
  
0.915
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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