STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smarca2SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily a, member 2. (1568 aa)    
Predicted Functional Partners:
smarce1
SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily e, member 1.
   
 0.899
smarcb1b
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
   
 0.841
pbrm1
Polybromo 1.
   
0.838
arid2
AT-rich interactive domain 2 (ARID, RFX-like).
   
 
 0.826
actl6a
Actin-like 6A; Belongs to the actin family.
   
 0.824
actl6b
Actin-like 6B; Belongs to the actin family.
   
 0.824
arid1b
AT-rich interactive domain 1B (SWI1-like).
   
 0.822
phf10
PHD finger protein 10; Involved in transcription activity regulation by chromatin remodeling in the context of the neural progenitors-specific chromatin remodeling complex (npBAF complex). May play a role in the proliferation of neural progenitors (By similarity).
   
 
 0.806
smarcc2
SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily c, member 2.
   
 0.800
smarcc1a
SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily c, member 1a.
   
 0.800
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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