Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
glipr1bGLI pathogenesis-related 1b. (247 aa)    
Predicted Functional Partners:
gart
Phosphoribosylglycinamide formyltransferase.
    
  0.802
cyb5r4
Cytochrome b5 reductase 4; NADH-cytochrome b5 reductase involved in endoplasmic reticulum stress response pathway; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.
     
 0.716
fgf20a
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.665
mettl1
tRNA (guanine-N(7)-)-methyltransferase; Methyltransferase that mediates the formation of N(7)- methylguanine in a subset of RNA species, such as tRNAs, mRNAs and microRNAs (miRNAs). Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Also acts as a methyltransferase for a subset of internal N(7)-methylguanine in mRNAs. Internal N(7)- methylguanine methylation of mRNAs regulates translation. Also methylates a specific subset of miRNAs.
      
 0.614
agbl5
Cytosolic carboxypeptidase-like protein 5; Metallocarboxypeptidase that mediates tubulin deglutamylation. Specifically catalyzes the deglutamylation of the branching point glutamate side chains generated by post-translational glutamylation in proteins such as tubulins. In contrast, it is not able to act as a long-chain deglutamylase that shortens long polyglutamate chains.
      
 0.605
lrrc10
Leucine-rich repeat-containing 10.
      
 0.601
kitlga
Kit ligand a.
      
 0.531
nox1
NADPH oxidase 1.
   
  
 0.500
cct2
Chaperonin-containing TCP1, subunit 2 (beta); Belongs to the TCP-1 chaperonin family.
    
 
 0.478
cct2-2
Chaperonin-containing TCP1, subunit 2 (beta); Belongs to the TCP-1 chaperonin family.
    
 
 0.478
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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