Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tm9sf3Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (586 aa)    
Predicted Functional Partners:
casc4
Cancer susceptibility candidate 4.
   
  
 0.916
smim7
Small integral membrane protein 7.
      
 0.749
tm9sf2
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
  
  
0.738
LOC558202
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
  
  
0.724
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
      
 0.714
zfpl1
Zinc finger protein-like 1; Required for cis-Golgi integrity and efficient ER to Golgi transport; Belongs to the ZFPL1 family.
      
 0.708
zgc:162698
Zgc:162698.
      
 0.698
vti1b
Vesicle transport through interaction with t-SNAREs homolog 1B (Yeast).
      
 0.697
lpgat1
Lysophosphatidylglycerol acyltransferase 1.
    
   0.651
ccdc186
Si:ch211-225b10.4.
      
 0.634
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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