Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
csrnp1aCysteine-serine-rich nuclear protein 1a. (514 aa)    
Predicted Functional Partners:
frmpd3
FERM and PDZ domain-containing 3.
      
 0.689
slco1f3
Solute carrier organic anion transporter family member.
      
 0.670
VSTM2B
Zgc:194678.
      
 0.595
draxin
Draxin; Chemorepulsive axon guidance protein required for the development of spinal cord and forebrain commissures. Acts as a chemorepulsive guidance protein for commissural axons during development. Able to inhibit or repel neurite outgrowth from dorsal spinal cord; Belongs to the draxin family.
      
 0.594
si:dkey-1c11.1
Si:dkey-1c11.1.
      
 0.594
msx1a
Muscle segment homeobox 1a.
      
 0.588
slco1e1
Solute carrier organic anion transporter family member.
      
 0.581
slco1f4
Solute carrier organic anion transporter family member.
      
 0.579
slco1f1
Solute carrier organic anion transporter family member.
      
 0.572
slco1f2
Solute carrier organic anion transporter family member.
      
 0.572
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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