STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
si:dkey-14d8.6Si:dkey-14d8.6 protein. (173 aa)    
Predicted Functional Partners:
ms4a17a.11
Membrane-spanning 4-domains, subfamily A, member 17A.11.
      
 0.978
LOC100149352
Uncharacterized protein.
      
 0.973
atp1a1a.3
Sodium/potassium-transporting ATPase subunit alpha.
   
  
 0.853
soul5
Heme-binding protein soul5.
      
 0.807
hebp2
Heme-binding protein 2.
      
 0.743
tnks1bp1
Tankyrase 1-binding protein 1.
      
 0.644
lepb
Leptin b.
      
 0.543
dpep1
Dipeptidase; Belongs to the metallo-dependent hydrolases superfamily. Peptidase M19 family.
   
  
 0.413
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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