Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ccdc180Coiled-coil domain-containing 180. (1088 aa)    
Predicted Functional Partners:
dlec1
DLEC1 cilia and flagella-associated protein.
    
 
 0.682
spaca9
Sperm acrosome-associated 9.
   
   0.680
cfap99
Cilia and flagella-associated protein 99.
    
 
 0.679
spata17
Spermatogenesis-associated 17.
    
 
 0.676
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 
 0.661
lrguk
Leucine-rich repeats and guanylate kinase domain-containing.
   
 
 0.655
F1QT40_DANRE
Si:ch1073-349o24.2.
    
  0.646
gmcl1
Germ cell-less, spermatogenesis-associated.
    
   0.634
spata4
Spermatogenesis-associated 4.
    
   0.634
fam228a
Family with sequence similarity 228 member A.
    
   0.634
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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