STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dlg4bDiscs, large homolog 4b (Drosophila); Belongs to the MAGUK family. (453 aa)    
Predicted Functional Partners:
or132-5
Odorant receptor, family H, subfamily 132, member 5.
    
 
 0.809
or104-2
Olfactory receptor.
    
 
 0.805
or115-15
Odorant receptor, family F, subfamily 115, member 15.
    
 
 0.743
grin2aa
Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.
    
 
 0.727
gps2
G protein pathway suppressor 2.
      
 0.721
grin1a
Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.
   
 
 0.693
sypb
Synaptophysin b.
      
 0.663
gabra6a
Gamma-aminobutyric acid (GABA) A receptor, alpha 6a; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
      
 0.629
caska
Calcium/calmodulin-dependent serine protein kinase a; Belongs to the MAGUK family.
   
 
0.615
trpa1b
Transient receptor potential cation channel, subfamily A, member 1b; Belongs to the transient receptor (TC 1.A.4) family.
    
 
 0.607
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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