Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
phf23aPHD finger protein 23A; Acts as a negative regulator of autophagy. (296 aa)    
Predicted Functional Partners:
suds3
Suppressor of defective silencing 3 homolog (SDS3, S. cerevisiae).
    
 
 0.858
kansl2
KAT8 regulatory NSL complex subunit 2.
   
 
 0.809
nup98
Nucleoporin 98.
   
 
 0.753
arid4a
AT-rich interactive domain 4A (RBP1-like).
   
 
 0.625
arid4b
Translocase of outer mitochondrial membrane 20.
   
 
 0.625
gps2
G protein pathway suppressor 2.
    
 
 0.616
bptf
Bromodomain PHD finger transcription factor.
   
 
 0.614
cutc
CutC copper transporter homolog (E. coli).
      
 0.599
mcrs1
Microspherule protein 1.
   
 
 0.594
sin3aa
SIN3 transcription regulator family member Aa.
    
 
 0.590
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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