ablim1b protein (Danio rerio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ablim1b

Actin-binding LIM protein 1b. (354 aa)

Predicted Functional Partners:

lrrc17

0.897

cfd

0.799

ablim2

0.750

ryr3

0.719

ablim3

0.695

cdc42l2

0.592

cdc42

0.592

mettl13

0.573

csf1b

0.551

ywhae2

0.546

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ablim1b	ablim2	ENSDARP00000042571	ENSDARP00000127095	Actin-binding LIM protein 1b.	Actin-binding LIM protein family, member 2.	0.750
ablim1b	ablim3	ENSDARP00000042571	ENSDARP00000140642	Actin-binding LIM protein 1b.	Actin-binding LIM protein family, member 3.	0.695
ablim1b	cdc42	ENSDARP00000042571	ENSDARP00000129339	Actin-binding LIM protein 1b.	Cell division cycle 42.	0.592
ablim1b	cdc42l2	ENSDARP00000042571	ENSDARP00000123487	Actin-binding LIM protein 1b.	Cell division cycle 42-like 2.	0.592
ablim1b	cfd	ENSDARP00000042571	ENSDARP00000057824	Actin-binding LIM protein 1b.	Complement factor D (adipsin); Belongs to the peptidase S1 family.	0.799
ablim1b	csf1b	ENSDARP00000042571	ENSDARP00000089407	Actin-binding LIM protein 1b.	Colony-stimulating factor 1b (macrophage).	0.551
ablim1b	lrrc17	ENSDARP00000042571	ENSDARP00000055316	Actin-binding LIM protein 1b.	Leucine-rich repeat-containing 17.	0.897
ablim1b	mettl13	ENSDARP00000042571	ENSDARP00000026819	Actin-binding LIM protein 1b.	eEF1A lysine and N-terminal methyltransferase; Dual methyltransferase that catalyzes methylation of elongation factor 1-alpha (eef1a1 and eef1a2) at two different positions, and is therefore involved in the regulation of mRNA translation. Via its C-terminus, methylates the N-terminus of eef1a1 and eef1a2. Via its N-terminus dimethylates lysine residues of eef1a1 and eef1a2.	0.573
ablim1b	ryr3	ENSDARP00000042571	ENSDARP00000131111	Actin-binding LIM protein 1b.	Ryanodine receptor 3.	0.719
ablim1b	ywhae2	ENSDARP00000042571	ENSDARP00000019829	Actin-binding LIM protein 1b.	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 2; Belongs to the 14-3-3 family.	0.546
ablim2	ablim1b	ENSDARP00000127095	ENSDARP00000042571	Actin-binding LIM protein family, member 2.	Actin-binding LIM protein 1b.	0.750
ablim2	ablim3	ENSDARP00000127095	ENSDARP00000140642	Actin-binding LIM protein family, member 2.	Actin-binding LIM protein family, member 3.	0.909
ablim2	cdc42	ENSDARP00000127095	ENSDARP00000129339	Actin-binding LIM protein family, member 2.	Cell division cycle 42.	0.862
ablim2	cdc42l2	ENSDARP00000127095	ENSDARP00000123487	Actin-binding LIM protein family, member 2.	Cell division cycle 42-like 2.	0.862
ablim3	ablim1b	ENSDARP00000140642	ENSDARP00000042571	Actin-binding LIM protein family, member 3.	Actin-binding LIM protein 1b.	0.695
ablim3	ablim2	ENSDARP00000140642	ENSDARP00000127095	Actin-binding LIM protein family, member 3.	Actin-binding LIM protein family, member 2.	0.909
ablim3	cdc42	ENSDARP00000140642	ENSDARP00000129339	Actin-binding LIM protein family, member 3.	Cell division cycle 42.	0.855
ablim3	cdc42l2	ENSDARP00000140642	ENSDARP00000123487	Actin-binding LIM protein family, member 3.	Cell division cycle 42-like 2.	0.855
cdc42	ablim1b	ENSDARP00000129339	ENSDARP00000042571	Cell division cycle 42.	Actin-binding LIM protein 1b.	0.592
cdc42	ablim2	ENSDARP00000129339	ENSDARP00000127095	Cell division cycle 42.	Actin-binding LIM protein family, member 2.	0.862

page 1 of 2

Server load: low (22%) [HD]

Permalink

Network

Co-occurrence

Experiments

Neighborhood

Databases

Fusion

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About