STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srpk1bSRSF protein kinase 1b. (658 aa)    
Predicted Functional Partners:
srpk1a
SRSF protein kinase 1a.
  
  
0.903
ppm1lb
Protein phosphatase, Mg2+/Mn2+-dependent, 1Lb.
   
 
 0.855
srsf6b
Serine and arginine-rich-splicing factor 6b.
    
 0.820
srsf5a
Serine and arginine-rich-splicing factor 5a.
    
 0.820
srsf6a
Serine and arginine-rich-splicing factor 6a.
    
 0.820
srsf5b
Serine and arginine-rich-splicing factor 5b.
    
 0.820
srsf4
Serine and arginine-rich-splicing factor 4.
    
 0.820
opn1lw2
Red-sensitive opsin-2; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.
      
 0.800
srsf9
Serine and arginine-rich-splicing factor 9.
    
 0.793
srsf1a
Serine/arginine-rich splicing factor 1A; May play a role in preventing exon skipping, ensuring the accuracy of splicing and regulating alternative splicing. Belongs to the splicing factor SR family.
    
 0.788
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.