Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
fbxw4F-box and WD repeat domain-containing 4. (392 aa)    
Predicted Functional Partners:
txndc9
Thioredoxin domain-containing 9.
    
   0.967
cct4
T-complex protein 1 subunit delta.
    
 
 0.944
cct5
Chaperonin-containing TCP1, subunit 5 (epsilon).
    
   0.940
skp1
S-phase kinase-associated protein 1A; Belongs to the SKP1 family.
    
 0.938
cct3
T-complex protein 1 subunit gamma.
    
   0.936
cul1a
Cullin 1a; Belongs to the cullin family.
    
 0.934
cct7
T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
    
   0.931
cul1b
Cullin 1b; Belongs to the cullin family.
    
 
 0.895
PDCL3
Phosducin-like protein 3; Acts as a chaperone for the angiogenic VEGF receptor KDR/VEGFR2, increasing its abundance by inhibiting its ubiquitination and degradation. Inhibits the folding activity of the chaperonin-containing T-complex (CCT) which leads to inhibition of cytoskeletal actin folding (By similarity). Acts as a chaperone during heat shock alongside HSP90 and HSP40/70 chaperone complexes (By similarity). Modulates the activation of caspases during apoptosis (By similarity).
    
   0.883
poll
Polymerase (DNA directed), lambda; Belongs to the DNA polymerase type-X family.
 
 
  
 0.872
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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