Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
lsm12aProtein LSM12 homolog B; Belongs to the LSM12 family. (196 aa)    
Predicted Functional Partners:
atxn2l
Ataxin 2-like.
    
 0.967
atxn2
Ataxin 2.
    
 0.965
nufip2
Nuclear FMR1-interacting protein 2.
   
 
 0.897
zgc:77849
UPF0472 protein C16orf72 homolog; Belongs to the UPF0472 family.
   
  
 0.893
Q1MT54_DANRE
Zgc:153437 protein.
    
   0.879
ddx61
DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.
    
 
 0.809
ddx6
DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.
    
 
 0.809
rtraf
RNA transcription, translation and transport factor protein; RNA-binding protein involved in modulation of mRNA transcription by Polymerase II. Component of the tRNA-splicing ligase complex.
    
 
 0.708
lsm10
Organic solute carrier partner 1a.
      
 0.708
lsm1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
   
 
 0.664
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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