Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
srsf5aSerine and arginine-rich-splicing factor 5a. (259 aa)    
Predicted Functional Partners:
srpk1b
SRSF protein kinase 1b.
    
 0.953
nxf1
Nuclear RNA export factor 1.
   
 0.946
zgc:153681
Zgc:153681.
   
 0.946
srpk1a
SRSF protein kinase 1a.
    
 0.924
srsf9
Serine and arginine-rich-splicing factor 9.
  
0.858
srsf1a
Serine/arginine-rich splicing factor 1A; May play a role in preventing exon skipping, ensuring the accuracy of splicing and regulating alternative splicing. Belongs to the splicing factor SR family.
  
0.829
srsf10b
Serine and arginine-rich-splicing factor 10b.
   
 0.826
snrpg
Small nuclear ribonucleoprotein G.
   
 
 0.822
tra2a
Transformer 2 alpha homolog.
   
 0.818
srsf7a
Serine and arginine-rich-splicing factor 7a.
   
0.816
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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