Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrpl27Mitochondrial ribosomal protein L27. (148 aa)    
Predicted Functional Partners:
mrpl19
Mitochondrial ribosomal protein L19.
  
 
 0.996
mrpl17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
 
 0.995
mrpl21
Mitochondrial ribosomal protein L21.
  
 
 0.995
mrpl32
Mitochondrial ribosomal protein L32.
  
 
 0.994
mrpl9
Mitochondrial ribosomal protein L9.
  
 
 0.994
mrpl20
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
  
 
 0.994
mrpl4
39S ribosomal protein L4, mitochondrial; Belongs to the universal ribosomal protein uL4 family.
  
 
 0.993
mrpl33
Mitochondrial ribosomal protein L33.
  
 
 0.993
mrpl13
Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.991
mrpl58
Mitochondrial ribosomal protein L58.
  
 
 0.989
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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