Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cabp5bCalcium-binding protein 5b. (169 aa)    
Predicted Functional Partners:
rs1a
Retinoschisis (X-linked, juvenile) 1.
   
 0.681
zpld1a
Zona pellucida-like domain-containing 1a.
      
 0.671
gnao1b
Guanine nucleotide-binding protein (G protein), alpha-activating activity polypeptide O, b.
   
 
 0.624
loxhd1b
Lipoxygenase homology domains 1b.
    
 
 0.602
wdr90
WD repeat domain 90.
    
 
 0.539
ak9
Adenylate kinase 9.
    
 0.505
guca1b
Guanylate cyclase-activating protein 2.
   
 0.504
caska
Calcium/calmodulin-dependent serine protein kinase a; Belongs to the MAGUK family.
    
 0.503
pvalb9
Parvalbumin 9; Belongs to the parvalbumin family.
      
 0.503
fxyd6l
FXYD domain-containing ion transport regulator; Belongs to the FXYD family.
      
 0.503
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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